HsaEX0064636 @ hg38
Exon Skipping
Gene
ENSG00000114126 | TFDP2
Description
transcription factor Dp-2 [Source:HGNC Symbol;Acc:HGNC:11751]
Coordinates
chr3:141995020-142093127:-
Coord C1 exon
chr3:142093061-142093127
Coord A exon
chr3:142005441-142005544
Coord C2 exon
chr3:141995020-141995141
Length
104 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTGATATCATTTCAGGCA
3' ss Score
7.28
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTTGGTTTGACTTCCACAAATGCAGAAGTAAGAGGATTTATAGATCAGAATCTCAGTCCAACAAAAG
Seq A exon
GCAACATTTCATTTGTTGCATTTCCAGTTTCCAATACCAACTCACCTACAAAGATTTTACCAAAAACCTTAGGACCAATAAATGTGAATGTTGGACCCCAAATG
Seq C2 exon
ATTATAAGCACACCACAGAGACTAACCAGTTCAGGAAGTGTTCTGATTGGGAGTCCATATACCCCTGCACCAGCAATGGTTACTCAGACACACATAGCAGAAGCTACTGGCTGGGTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114126-'19-62,'19-55,34-62
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=0.342 C2=0.427
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000489671fB27950
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTGACTTCCACAAATGCA
R:
CCAGGGACCCAGCCAGTAG
Band lengths:
187-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development