HsaEX0064638 @ hg38
Exon Skipping
Gene
ENSG00000114126 | TFDP2
Description
transcription factor Dp-2 [Source:HGNC Symbol;Acc:HGNC:11751]
Coordinates
chr3:141993538-142005544:-
Coord C1 exon
chr3:142005441-142005544
Coord A exon
chr3:141995020-141995141
Coord C2 exon
chr3:141993538-141993585
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTCCTAACTTTACAGATT
3' ss Score
10.22
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GCAACATTTCATTTGTTGCATTTCCAGTTTCCAATACCAACTCACCTACAAAGATTTTACCAAAAACCTTAGGACCAATAAATGTGAATGTTGGACCCCAAATG
Seq A exon
ATTATAAGCACACCACAGAGACTAACCAGTTCAGGAAGTGTTCTGATTGGGAGTCCATATACCCCTGCACCAGCAATGGTTACTCAGACACACATAGCAGAAGCTACTGGCTGGGTCCCTGG
Seq C2 exon
TGATAGAAAACGGGCTAGAAAATTTATAGACTCTGATTTTTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114126-'34-66,'34-62,43-66
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.342 A=0.427 C2=0.430
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATTTCATTTGTTGCATTTCCA
R:
CAGAGTCTATAAATTTTCTAGCCCGT
Band lengths:
138-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development