RnoEX0090090 @ rn6
Exon Skipping
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104128475-104148511:+
Coord C1 exon
chr8:104128475-104128578
Coord A exon
chr8:104145439-104145560
Coord C2 exon
chr8:104148464-104148511
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTACCAACTTTACAGATT
3' ss Score
7.65
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTAACATTTCACTTGTGGCCTTTCCAGTTTCAAGCACCAACTCACCAACAAAGATTTTACCGAAAACCTTAGGGCCAGTAAATGTGAATGTTGGACCCCAAATG
Seq A exon
ATTATAAGCACACCACAGAGAATTACCAATTCAGGAAGTGTTCTGATTGGGAGTCCATATACCCCTGCACCAGCAATGGTCACTCAGACTCACATAGCTGAGGCTGCTGGCTGGGTTCCCAG
Seq C2 exon
TGATAGAAAACGAGCTAGAGAATTTATAGACTCCGATTTTTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241_MULTIEX4-3/6=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=0.378 C2=0.529
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000081204fB15029
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATTTCACTTGTGGCCTTTCC
R:
TCGGAGTCTATAAATTCTCTAGCTCG
Band lengths:
138-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]