DreEX0078400 @ danRer10
Exon Skipping
Gene
ENSDARG00000042835 | tfdp2
Description
transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
Coordinates
chr15:4453925-4484497:-
Coord C1 exon
chr15:4484409-4484497
Coord A exon
chr15:4475733-4475863
Coord C2 exon
chr15:4453925-4454087
Length
131 bp
Sequences
Splice sites
3' ss Seq
TGTATTATTTGTGTCTGCAGATT
3' ss Score
9.56
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GCAACATTTCCCTGTTAACGCCGTCCAGCTACAGCCCAGCCAACAAGATCACACTAGGAACGGTCAATTCAAATGTGGGAGCCCAGATG
Seq A exon
ATTTTAAGCACACCACAGAGAGTCTCTCACTCTGGAAATATCCTCATCGGCAGCCCGTTTACGCCCCACACAACGCCGGTTGCCATGGTTACTCAGGCACACCCACCCGAAGGCAACGAGTGGACCCCGGG
Seq C2 exon
TAAGAGATTGAAAAGGGCGGATAAGAATGGTAAAGGCCTGCGGCATTTCTCCATGAAGGTGTGCGAGAAGGTCCAGAAGAAAGGCACTACGTCGTACAACGAGGTGGCAGATGAGCTGGTAGCCGAGTTCACACACGCCAGCAGTCTGATGCCTGCAGACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042835_MULTIEX1-5/10=4-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.648 C2=0.224
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0231915=E2F_TDP=PU(56.1=83.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCCCTGTTAACGCCGTCC
R:
AGAGTCTGCAGGCATCAGACT
Band lengths:
247-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]