GgaEX6046033 @ galGal3
Exon Skipping
Gene
ENSGALG00000002753 | F1N8A4_CHICK
Description
NA
Coordinates
chr9:11439873-11444671:-
Coord C1 exon
chr9:11444568-11444671
Coord A exon
chr9:11441963-11442084
Coord C2 exon
chr9:11439873-11439920
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTATTTCTAAATTTTGTAGATA
3' ss Score
7.9
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTAATATTTCAGTAATCACACTACCAGTTTCCAGTACCAACTCCCCAACAAAGATATTGCCAAAAACCTTAGGACCAATCAATGTGAATGTTGGACCCCAAATG
Seq A exon
ATAATAAGCACATCACAAAGACTGACCAATTCAGGGGGTGTTCTGATTGGAAGTCCGTATAACCCAGCTCCAACGATGGTGACGCAGACACACATAACAGAAGCTACTGGCTGGATTCCAGG
Seq C2 exon
GGAAAGGAAGCGAACTCGAGAATTTATAGAATCGGATTTTTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002753-'7-8,'7-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.585 C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTAATCACACTACCAGTTTCCAGT
R:
CCGATTCTATAAATTCTCGAGTTCGC
Band lengths:
130-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]