BtaEX0036256 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006222 | TFDP2
Description
Bos taurus transcription factor Dp-2 (E2F dimerization partner 2) (TFDP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075241]
Coordinates
chr1:127977960-127985295:+
Coord C1 exon
chr1:127977960-127978036
Coord A exon
chr1:127982126-127982247
Coord C2 exon
chr1:127985248-127985295
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCCTTGTTTTGACTTTACAGATT
3' ss Score
9.98
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
TTTCCAGCACCAACTCACCAACAAAGATTTTACCAAAAACCTTAGGACCAATAAATGTGAATGTTGGACCCCAAATG
Seq A exon
ATTATAAGCACACCGCAGAGACTAACCAGTTCAGGAAGTGTTCTGATTGGGAGTCCATACACCCCTGCTCCAGCAATGGTTACTCAGACACACATAGCAGAAGCTGCTGGCTGGGTCCCAGG
Seq C2 exon
TGATAGAAAACGGGCTAGAGAATTTATAGACTCTGATTTTTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006222-'4-11,'4-10,7-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.333 C2=0.529
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000008169fB7060
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCAGCACCAACTCACCAA
R:
ATCAGAGTCTATAAATTCTCTAGCCC
Band lengths:
114-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development