BtaEX0036545 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015713 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr19:47612416-47629270:+
Coord C1 exon
chr19:47612416-47612583
Coord A exon
chr19:47625631-47625723
Coord C2 exon
chr19:47629160-47629270
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGCTTATCCCTGTAGTCT
3' ss Score
8.52
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CGGCGAGTAGAACAGCCTCTCTATGGTTTAGATGGCAGCGCTACAAAGGAGGTGTCAGAGGAGCAGTCTGCCCTGCCAACGCTTATGTCAGTGATGCTGGCAAAACCTCGGCTCGACACAGAGCAGCTGGCACAGAGGGGAGCTGGCCTCTGCTTCACTTTTGTCTCA
Seq A exon
TCTGACCTCACAATAGAAAAAATATCTGCACTAGAAAACAGTAAGAATTCTGATTTAGAGAAGAAGGAAGGAAGAATAGATGATTTATTAAGA
Seq C2 exon
GCCAACTGTGATTTGAGACGGCAGATTGATGAACAGCAAAAGATGTTAGAGAAATACAAAGAACGATTAAATCGATGTGTGACGATGAGCAAGAAACTGCTTATAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015713_MULTIEX3-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.548 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTAGATGGCAGCGCTACA
R:
TGCTGTTCATCAATCTGCCGT
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development