GgaEX1058702 @ galGal3
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2282052-2287304:+
Coord C1 exon
chr27:2282052-2282150
Coord A exon
chr27:2285729-2285821
Coord C2 exon
chr27:2287194-2287304
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATGATGGTTTTCTTTTACAGTCG
3' ss Score
8.86
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CAGGCCCAGCAAGGCAGCCCATCTTCTACGGGATCAGGGAACACTGAGCATTCCTGCACTTCCCAAAAACAGATTTCCATCCAGCACAAACAGTCACAG
Seq A exon
TCGGACCTCACAATGGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTGGAGAAGAAGGAAGGGAGGATAGATGACTTACTAAGA
Seq C2 exon
GCCAACTGTGATTTGAGACGGCAGATAGATGAACAACAAAAGATGCTGGAGAAGTACAAGGAGCGGTTGAATAGATGTGTAACGATGAGCAAGAAGCTCCTTATAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410-'12-16,'12-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.785 C2=0.288
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCAGCCCATCTTCTACG
R:
ACACATCTATTCAACCGCTCCT
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]