DreEX6016093 @ danRer10
Exon Skipping
Gene
ENSDARG00000010779 | tlk2
Description
tousled-like kinase 2 [Source:ZFIN;Acc:ZDB-GENE-060623-36]
Coordinates
chr3:19547960-19552543:+
Coord C1 exon
chr3:19547960-19548067
Coord A exon
chr3:19548156-19548248
Coord C2 exon
chr3:19552433-19552543
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCGGTTACTGTTTCCTCAGTCT
3' ss Score
4.54
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTGCAGCAAGGAAGCCCCTCCTCCATCAGTTCAGTAAACACAGACCACTCCCACACCTCCACCTCCCACAAGCCAGCCTCAATACACACTCAGCACCGAGCTTCACAG
Seq A exon
TCTGAGCTGACTATGGAGAAATTAGCAGCGCTGGAGAGCAGTAAGAGTTCAGATCTGGAGAAGAAAGAAGGACGTATCGATGACCTGCTCAGG
Seq C2 exon
GTGAACTGTGACCTGCGCAGACAGATCGATGAGCAGCAGAAGATGCTGGAGTGGTGTAAAGAACGCCTCAATAAATGTGTGACCATGAGTAAGAAACTGCTTATCGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010779-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.742 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCCCTCCTCCATCAGTT
R:
GAGGCGTTCTTTACACCACTCC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]