BtaEX0037165 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008342 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr15:29001887-29009868:-
Coord C1 exon
chr15:29009696-29009868
Coord A exon
chr15:29004320-29004418
Coord C2 exon
chr15:29001887-29002029
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTCTTGAGGTCTTGTCGCAGCTC
3' ss Score
3.11
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
TACCCGGGAGAAGATTTTGGAGGGCTGGAAGGTGTACGTGGGCACCAACGATCTGCACCACCTGCCCGAGTCAGCCTCCGTCGCCCAGATCATCATCAACAGCAACTACTCAGATGATCAGGACGACTATGACATCGCCCTCATGCGGCTCTCCAAGCCCCTGACCCTGTCCG
Seq A exon
CTCATGTCCACCCTGCCTGCCTCCCCATGCACGGACAGACCTTCGGCCTCAATGAGATCTGCTGGATCACAGGCTTTGGCAAGACCAAGGAGACAGATG
Seq C2 exon
AGAGGACTTCCCCTTTTCTCCGGGAGGTGCAGGTTAACCTCATTGATTTCAAGAAGTGCAATGACTACTTGGTCTACGACAGCTACCTTACCCCGAGGATGATGTGCGCGGGGGACCTGCGAGGAGGCAGAGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008342_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.3=100)
A:
PF0008921=Trypsin=FE(14.4=100)
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAGGGCTGGAAGGTGTA
R:
TCCCGGAGAAAAGGGGAAGTC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development