DreEX6012252 @ danRer10
Exon Skipping
Gene
ENSDARG00000077573 | tmprss13b
Description
transmembrane protease, serine 13b [Source:ZFIN;Acc:ZDB-GENE-090309-2]
Coordinates
chr5:37290624-37293481:-
Coord C1 exon
chr5:37293319-37293481
Coord A exon
chr5:37290866-37290964
Coord C2 exon
chr5:37290624-37290766
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTCTATTTGTCATTAAAGGCG
3' ss Score
5.46
5' ss Seq
GTAGTATGT
5' ss Score
3.71
Exon sequences
Seq C1 exon
ATTGTGGAAGGCCACCAGTTTCATCAAGGATTATTGGGGGAAGCGTGGCTGCTGAGGGTCACTGGCCATGGCAGGCCAGTCTGCATTTTCAAGGAAAGCACTCATGTGGAGGATCTCTGGTGGCTCCAGACTTTATCATCACTGCTGCTCACTGCTTCCCCAA
Seq A exon
GCGATGTAGAGCCCATATGCCTGCCTGTGATTGGCCAGACGTTTCCACCTGCCAAACAATGCTGGACAACTGGTTTTGGAGTTATTCGACAAGGCAGTA
Seq C2 exon
ATAGTGTTTCCACTTCTCTAATGGAGGTCACAGTAAGCCTGATAGACTCGAGTGTGTGTAACTCACCTAATGTTTACAATGGAGAAATCACCGAGAACATGCAGTGTGCTGGAGACCTTAGAGGAGGAAAAGACTCGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077573-'7-17,'7-15,14-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(12.5=9.1),PF0008921=Trypsin=PU(19.5=80.0)
A:
PF0008921=Trypsin=PD(29.7=57.6)
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCACTGCTGCTCACTGC
R:
CTGGCACGAGTCTTTTCCTCC
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]