RnoEX6035527 @ rn6
Exon Skipping
Gene
ENSRNOG00000016397 | Tmprss13
Description
transmembrane serine protease 13 [Source:RGD Symbol;Acc:1310872]
Coordinates
chr8:49642430-49648400:+
Coord C1 exon
chr8:49642430-49642602
Coord A exon
chr8:49646328-49646426
Coord C2 exon
chr8:49648258-49648400
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACCTCAATGTCTTGTTGCAGCTC
3' ss Score
9.06
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GACCCGGGAGAAGATTCTGGAGGGGTGGAAGGTGTACGCAGGCACCAGCAACTTGCACCAGCTGCCTGAGGCTGCCTCTATCTCCCAGATCATCATCAACGGCAACTACACCGATGAACAGGATGACTATGACATCGCCCTCGTGAGGCTGTCCAAGCCCTTGACCCTGTCAG
Seq A exon
CTCACATCCACCCTGCCTGCCTCCCTTTGCATGGGCAGACCTTCGGCCTCAATGAGACCTGTTGGATCACTGGCTTTGGCAAAACCAAGGAAACAGATG
Seq C2 exon
AGAAGACATCTCCCTTCCTCCGAGAGGTTCAGGTCAACCTCATCGACTTCAAGAAGTGCAATGACTACTTGGTCTATGACAGTTACCTTACCCCAAGGATGATGTGTGCGGGGGACCTTCGAGGAGGCAGGGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016397-'11-13,'11-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.3=100)
A:
PF0008921=Trypsin=FE(14.4=100)
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTGGAGGGGTGGAAGGT
R:
CGGAGGAAGGGAGATGTCTTCT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]