DreEX0079980 @ danRer10
Exon Skipping
Gene
ENSDARG00000100969 | tmprss13a
Description
transmembrane protease, serine 13a [Source:ZFIN;Acc:ZDB-GENE-090309-3]
Coordinates
chr15:12399822-12405724:-
Coord C1 exon
chr15:12405555-12405724
Coord A exon
chr15:12402567-12402665
Coord C2 exon
chr15:12399822-12399964
Length
99 bp
Sequences
Splice sites
3' ss Seq
CATTTTCCTTCTCTGTCCAGATA
3' ss Score
9.79
5' ss Seq
CTGGTATAA
5' ss Score
2.2
Exon sequences
Seq C1 exon
CAAAATGGCAAATTCAGCATACTGGCTAGTTTATGTTGGGATTGTTTCCCAGCAATCCCTGGGGATGCCCTATCTAGTGAAGAAGATTATAGTCAGTGAGAAGTACAACAGCGACACCAATGATAATGATGTGGCTTTACTGATACTCAGCAGACCTGTGGCATTCTCTT
Seq A exon
ATACTACACAGCCAGTTTGCCTTCCTACATTTAACCAGACCTTTTCTGGTGGATTGCAGTGCTGGACATCAGGCTTTGGGACAACAAAACAAGGAGCTG
Seq C2 exon
ATCGTGCCTCGAGCAGCCTCATGAGTGTGAGTGTGAACATCATAGACTCCAGTGTGTGCAACAGCTGTCAGATTTATTGTGGCCTCATCACCAATAATATGATCTGTGCTGGAGATCTGAAGGGAGGACGAGACTCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100969-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(24.9=100)
A:
PF0008921=Trypsin=FE(14.4=100)
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGGGATGCCCTATCTAG
R:
CTGTTGCACACACTGGAGTCT
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]