GgaEX6025852 @ galGal4
Exon Skipping
Gene
ENSGALG00000021273 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr24:5414803-5415611:-
Coord C1 exon
chr24:5415439-5415611
Coord A exon
chr24:5415168-5415266
Coord C2 exon
chr24:5414803-5414945
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTGGTTTTCATCCAGCTC
3' ss Score
7.69
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAACAGCATGAAGATCCTCGACGACTGGAAGGTGTACGGCGGGGTGTCGGACCTCAAGCAGCCCATGGAGGGCATCCCAGTCTCCCAGGTCATCATCAACTCCAACTACAGTGATGACCACGACGACTATGACATTGCTCTCATGAAGCTCTCCCGGCCGCTGACGCTCTCAG
Seq A exon
CTCAGATTCGCCCAGCCTGCCTCCCCATGCACGGCCAGCGGTTCCAGACCGGCAGGTCCTGCTTCATCACCGGCTTCGGGAAGACCAGGGAGAACGAAG
Seq C2 exon
ATAACACCTCCCCAAAGCTGCGGGAGGCCGAGGTCAAACTCATTGACTACAAGATCTGCAACAGTGACAAGGTGTACGAGGGCTACCTGACCCCGCGCATGATGTGCGCTGGGTACCTGCAGGGGGGGAAGGATGCGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021273-'11-14,'11-9,13-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.377
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.3=100)
A:
PF0008921=Trypsin=FE(14.4=100)
C2:
PF0008921=Trypsin=PD(15.2=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCTCGACGACTGGAAGG
R:
GCAGCTTTGGGGAGGTGTTAT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]