BtaEX0037304 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011706 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr16:58096878-58156083:-
Coord C1 exon
chr16:58155585-58156083
Coord A exon
chr16:58103524-58104000
Coord C2 exon
chr16:58096878-58097141
Length
477 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCTTGGCCATTCCAGGAC
3' ss Score
8.28
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATGGGGGCAGACAGGGAGACAGTGGTCTTGAAGAACGTGCTCATTGGCATCAACCTGATCCTTCTGGGCTCCTTGCTCGAGCCCTCGGAGTGTCAGCTGGAGGTCACCATGGGAAGGGTCCAGAGACCAGCGGTGGAGGAGGAAGGAGGCGCTGCCAGCTACAACGCATCTGGCAAGGAGCAGCCGGTGGTCTTCAACCACGTGTACAACATCAACGTGCCCCTGGATAGCCTCTGCTCCTCAGGGCTGGAGGCCTCGGCCGAGCATGAGGTGAGCACCGAAGACGAGGTGCTGACGGAGTACACGGGCCAGACCTCAGACCACGAGAGCCAGGTCACCTTCACGCACAGGATCAACCTCCCCAAGAAGGCCTGCCCGTGTGCCAGCTCGGCCCAGGTGCTACAGGAGCTGCTGAGCCGAATTGAGATGCTGGAGAGGGAGGTGTCTGTGCTGCGGGACCAATGTACCAGCAACTGCTGCCCAGAGAGTGCGGCCACAG
Seq A exon
GACAACTGGACTATATCCCTCACTGCAGTGGCCATGGCAACTTTAGCCTGGAGTCCTGTGGCTGCATCTGCGATCAAGGCTGGTTTGGCAAGAACTGCTCGGAGCCCTACTGCCCCCTGGGCTGCTCCAGTCGGGGCGTGTGTGTGGACGGCCAGTGCGTCTGTGACAGCGAGTACAGCGGGGACGACTGCTCAGAACTCCGGTGCCCAACCGACTGCAGCTCCCGGGGGCTGTGCGTGGACGGGGAATGCGTCTGCGAAGAGGCCTACACGGGCGAGGACTGCAGCGAGCTGAGGTGCCCCGGGGACTGTTCAGGGAAGGGGATCTGTGCCAACGGTACCTGCCTGTGCCAGGAAGGCTACGTCGGTGAGGACTGCGGCCAGCGGCGGTGTCCAAATGCCTGCAGCGGCCGAGGACACTGCCAGGAGGGGCTGTGCCTCTGTGAAGAGGGCTTCCAGGGCCCTGACTGCTCAGCAG
Seq C2 exon
TTGCCCCTCCAGAGGACTTGCGAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACGGGCCGATGGCAGTGACGGAATATGTGATCTCTTACCAGCCGACGGCCCTGGGGGGCCTCCAGCTCCAGCAGCGGGTGCCTGGAGATTGGAGTGGCGTCACCATCTCAGAGCTGGAGCCAGGTCTCACCTACAACATCAGCGTCTACGCTGTCATTAGCAACATCCTCAGCCTTCCCATCACTGCCAAGGTGGCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011706-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9)
C2:
PF0004116=fn3=WD(100=87.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAACATCAACGTGCCCCT
R:
ATGGACCTGTCGCTGATACCA
Band lengths:
345-822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development