RnoEX0092533 @ rn6
Exon Skipping
Gene
ENSRNOG00000002468 | Tnr
Description
tenascin R [Source:RGD Symbol;Acc:3886]
Coordinates
chr13:77602249-77611140:+
Coord C1 exon
chr13:77602249-77602905
Coord A exon
chr13:77604370-77604846
Coord C2 exon
chr13:77610877-77611140
Length
477 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCTTGGCCATTCTAGGAC
3' ss Score
9.2
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GATGGGGATCGAAGGGGAAACAGTAGTCTTGAAGAACATGCTCATTGGTGTAAACCTGATCCTGTTGGGATCCATGCTCAAGCCTTCTGAATGCCGGCTGGAAGTGACTACAGAAAGGGTCCAGAGACAAACTGTGGAGGAGGAAGGAGGGGCTTCCAGCTACAACACATCCAGCAAGGAACAGCCTATGGTCTTTAACCATGTGTATAACATCAACGTGCCACTCGAAAGCCTCTGCTCCTCGGGGCTGGAGGCCTCAGCTGAGCAGGACGTGAGTGCCGAAGATGATACTCTGGCAGAATACACAGGCCAAACCTCAGACCATGAAAGCCAGGTCACCTTCACCCACAAGATCAACCTCCCCAAAAAAGCCTGCCCATGTGCAAGCTCTGCCCAGGTACTGCAGGAACTGTTGAGCCGAATCGAGATGCTGGAGAGGGAGGTGTCAGTGCTGCGAGACCAGTGCAACACCAACTGCTGTCAGGAAAGTGCTGCCACAG
Seq A exon
GACAACTGGACTATGTCCCTCACTGCAGCGGCCATGGCAACTTTAGCTTCGAGTCCTGTGGCTGCATCTGCAATGAAGGCTGGTTTGGCAAGAACTGCTCAGAGCCCTACTGCCCATTGGGCTGCTCCAGTCGGGGTGTATGTGTCGATGGCCAGTGCATTTGTGACAGTGAATACAGCGGAGATGACTGTTCAGAGCTCCGGTGCCCAACAGACTGCAGTTCCCGAGGGCTCTGTGTGGATGGGGAATGTGTCTGTGAAGAGCCCTACACAGGCGAGGACTGCAGGGAGCTGCGTTGCCCTGGGGACTGTTCAGGGAAGGGGCAATGTGCCAATGGTACCTGCCTGTGCCAAGAGGGCTATGCTGGTGAGGACTGCAGTCAGCGACGGTGTCTGAATGCTTGCAGTGGGCGAGGTCACTGCCAGGAGGGGCTCTGCATCTGTGAGGAGGGCTACCAGGGCCCTGACTGCTCAGCAG
Seq C2 exon
TTACCCCTCCAGAGGACTTGCGAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACGGGCCGATGGCAGTGACGGAATATGTGATCTCTTACCAGCCGACGGCCCTGGGGGGCCTTCAGCTCCAGCAGCGGGTGCCTGGAGATTGGAGTGGTGTCACCATCACGGAGCTGGAGCCAGGTCTCACCTACAACATCAGCGTCTACGCTGTCATTAGCAACATCCTCAGCCTTCCCATCACTGCCAAGGTGGCCACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002468_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.251 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=18.1)
C2:
PF0004116=fn3=WD(100=87.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGAGCCGAATCGAGATGC
R:
CACCTTGGCAGTGATGGGAAG
Band lengths:
347-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]