GgaEX6043890 @ galGal4
Exon Skipping
Gene
ENSGALG00000004526 | TNR
Description
tenascin-R precursor [Source:RefSeq peptide;Acc:NP_990607]
Coordinates
chr8:7010718-7014542:+
Coord C1 exon
chr8:7010718-7011273
Coord A exon
chr8:7013384-7013860
Coord C2 exon
chr8:7014279-7014542
Length
477 bp
Sequences
Splice sites
3' ss Seq
CATCCCACATCATTTTGCAGGAC
3' ss Score
8.59
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GAAAATGGGGACTGACAGTGAAAACCCAGTCCTGAGAAATGTGCTCATCAGCTTCAACTTGCTGCTGCTGGGTGCTGTCCTGAAGCCGTTCGAGTGCCGGCTGGAGGTGACAACAGAGCCAGCCGAGAGGCCGGCAGTGGATGAGGAGGGGGGCCTGGCCAACTGCAGCCCACCCGTCAAAGAGCAGCCCATGGTCTTCCACCACATCTACAACATCAACGTCCCCGTGGACAGCTGCTGCTCCTCCATGCTCAGGTCTTCGGCTGAGGAGGTGAGTTCAGAAGACGACAGGCTGGCGGAGTACACGGAGCAGACCTCTGACAGCGAGAGCCAGGTCACCTTCACCCACAGGATAAACTTGCCCAAGCAGGCCTGTAAGTGCTCCACCTCCCTCCCGTCCCTGCAGGAGCTGCTGAGCAGGATTGAGATGCTGGAGAGGGAGGTCTCCATGCTCCGGGACCAATGCAACTCCAATTGCTGCCAAGAAAATGCAGCCACAG
Seq A exon
GACGCCTGGATTACACCTTACCATGCAGCGGCCACGGGAACTTCAGCCTGGAGTCGTGCCGTTGCATCTGCAGTGAGGGCTGGGCGGGCAGCAACTGCTCAGAGCCGCGCTGCCCACGGGGCTGCTCCAGCCGTGGGGTCTGCCTGGAGGGTCAGTGCGTCTGCGACAATGACTACGGCGGTGAGGACTGCTCCCAGCTCCGCTGCCCCGCCGGCTGCGGCTCCCGCGGGCTCTGCGTGGATGGAGAATGCATCTGCGAGGAGGGCTTTGGTGGGGAGGACTGCTCTCAGCCCCGCTGCCCCCGTGATTGCTCGGGAAGGGGACACTGTGACAACGGCACCTGTGTGTGCGCCGAGGGCTATGCTGGGGAGGACTGCGGGTGGCTGCGGTGTCCCAACGCCTGCAGCGGACGAGGCGTCTGCCAGGATGGCCTCTGCATCTGCGAGGACGGCTACGGAGGGCAGGACTGCTCGGCAG
Seq C2 exon
TGGCTCCTCCTGAAAACCTGCGTGTGACAGGGATCAGCGATGGCTCCATTGAGCTAGCATGGGACAGCCCAGGAGCAGCCACTGAGTACGTGGTATCATACCAGCCAGCGGGGCCAGGGGGATCCCAGCTCCAGCAGCGGGTGCCTGGGGACTGGAGCACCATCACCATCACGGAGCTGGAGCCAGGTGTTGCCTACAATGTCAGCATCTACGCAGTCATCAGCGATGTCTTGAGCAGCCCTGTCACCACCAAGGTGACAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004526-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.000 C2=0.101
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9)
C2:
PF0004116=fn3=WD(100=89.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAGTGCTCCACCTCCCTC
R:
GCTGATGACTGCGTAGATGCT
Band lengths:
351-828
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]