DreEX0080372 @ danRer10
Exon Skipping
Gene
ENSDARG00000020771 | tnr
Description
tenascin R (restrictin, janusin) [Source:ZFIN;Acc:ZDB-GENE-030804-1]
Coordinates
chr2:35407946-35424745:+
Coord C1 exon
chr2:35407946-35408489
Coord A exon
chr2:35413143-35413616
Coord C2 exon
chr2:35424482-35424745
Length
474 bp
Sequences
Splice sites
3' ss Seq
ACATATTTGTTTGCTCTCAGGTC
3' ss Score
9.85
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TGCCCGAGTTGTGATGTGGGGGTGCGCCATGGCAATACAAGGTTCAGTAGTGAGCCTGGCTCTACTGTTCTTCGGGATTCAAGCTGTTCCCAGCCCCACCAGCAAACTAGTGAGGACCACAAGGGTGAGGCGACAGGTTCCAGAGGGGGGCGATCCTGCTGACAACCAGATGCAGCCTATGGTCTTCAATCACGTATACAACATCAACGTACCTGTAGAGTCCCTCTGTTCAGTGGACCTAGATGCGGTGACAGGTCCAGAGACGAACAAAACAGCATCTGGGAGTGATAAGATGCCGACGGAGTACACAGAGGAAACAGTGGACTCGGACAGCCAGGTGACCTTCACCCATCGCATCAATATCCCAAAGCAGGCCTGTGCTTGTCCTTCAGCTACCACCATAGAGCAGCTGGCAAGCCGCATAGAGATGCTGGAGAGAGAGGTGTCGCTGCTTCGAACGCAGTGTAGCTCCAGCTGCTGCGGAGAGAGCTCTGTCATGG
Seq A exon
GTCGCCTAGACTTCGTCCCTCAGTGCGGCCATGGCACATTCAGTATGGAGGTTTGCGGGTGTGTTTGTGAAGAAGGCTGGATTGGCAAGAACTGCACTGAGCCACGCTGCCCAGACGACTGCTCGGGCCAGGGCATTTGCATCGAAGGCGATTGTGTTTGCGACCGTAATTTCGGTGGTGAAAACTGCTCCGAGCCACGATGTCCAAGTGACTGCTCTGACAGGGGCTTGTGTATTGACGGGGAGTGTGTTTGTGAGGAGGCCTTCGCGGGGGAGGACTGCTCACTGGGCAGATGTCTAAACGACTGCTCGGATCAAGGGGCCTGTGTGAACGGAAGCTGCCAGTGCCGATCCGGCTTCCTGGGGGAAGACTGCTCGCTCATCTTCTGCGCTAATAACTGCAGCCAGAGAGGTGTGTGCAAGGAGGGCTTCTGCGTCTGTCAAGAGGGATACACAGGAGATGACTGCACTTCAG
Seq C2 exon
TTTTACCTCCAATGAATCTGCGAGTTCGGGGAGTGTCAGAAAACACCATTGATCTACAGTGGGAAGGCCCAGCGATCCTGACAGACTATCTCATCACTTATGCCCCCACAACTCCAGGCGGAGTCCAGCTAGAAATGAGAGTCCCGGGAAATGTTACCAACATCACCATCAAAGGTTTAAATCCGGGTCTGGAGTACAATGTCAACGTGTATGCAGTGATTGACAACATCATCAGCTCCCCAATGAACACCTTAGTCTCCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020771-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.307 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126612=hEGF=WD(100=8.2),PF079748=EGF_2=WD(100=17.0),PF079748=EGF_2=WD(100=17.0),PF079748=EGF_2=WD(100=17.0),PF079748=EGF_2=WD(100=17.0)
C2:
PF0004116=fn3=WD(100=89.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGATAAGATGCCGACGG
R:
ATTTCTAGCTGGACTCCGCCT
Band lengths:
355-829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]