BtaEX0037305 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011706 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr16:58092984-58104000:-
Coord C1 exon
chr16:58103524-58104000
Coord A exon
chr16:58096878-58097141
Coord C2 exon
chr16:58092984-58093099
Length
264 bp
Sequences
Splice sites
3' ss Seq
TGTGTATTGCCTCCTGGTAGTTG
3' ss Score
6.77
5' ss Seq
CCCGTACGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GACAACTGGACTATATCCCTCACTGCAGTGGCCATGGCAACTTTAGCCTGGAGTCCTGTGGCTGCATCTGCGATCAAGGCTGGTTTGGCAAGAACTGCTCGGAGCCCTACTGCCCCCTGGGCTGCTCCAGTCGGGGCGTGTGTGTGGACGGCCAGTGCGTCTGTGACAGCGAGTACAGCGGGGACGACTGCTCAGAACTCCGGTGCCCAACCGACTGCAGCTCCCGGGGGCTGTGCGTGGACGGGGAATGCGTCTGCGAAGAGGCCTACACGGGCGAGGACTGCAGCGAGCTGAGGTGCCCCGGGGACTGTTCAGGGAAGGGGATCTGTGCCAACGGTACCTGCCTGTGCCAGGAAGGCTACGTCGGTGAGGACTGCGGCCAGCGGCGGTGTCCAAATGCCTGCAGCGGCCGAGGACACTGCCAGGAGGGGCTGTGCCTCTGTGAAGAGGGCTTCCAGGGCCCTGACTGCTCAGCAG
Seq A exon
TTGCCCCTCCAGAGGACTTGCGAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACGGGCCGATGGCAGTGACGGAATATGTGATCTCTTACCAGCCGACGGCCCTGGGGGGCCTCCAGCTCCAGCAGCGGGTGCCTGGAGATTGGAGTGGCGTCACCATCTCAGAGCTGGAGCCAGGTCTCACCTACAACATCAGCGTCTACGCTGTCATTAGCAACATCCTCAGCCTTCCCATCACTGCCAAGGTGGCCACCC
Seq C2 exon
ATCTCTCCACGCCTCAAGGGCTCCGATTCAAGACGATCACAGAGACCACCGTGGAGGTGCAGTGGGAGCCCTTCTCATTCTCCTTCGATGGGTGGGAGATCAGCTTCATTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011706-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9)
A:
PF0004116=fn3=WD(100=87.6)
C2:
PF0004116=fn3=PU(44.4=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCGAAGAGGCCTACAC
R:
AGAATGAGAAGGGCTCCCACT
Band lengths:
307-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development