DreEX0080373 @ danRer10
Exon Skipping
Gene
ENSDARG00000020771 | tnr
Description
tenascin R (restrictin, janusin) [Source:ZFIN;Acc:ZDB-GENE-030804-1]
Coordinates
chr2:35413143-35427368:+
Coord C1 exon
chr2:35413143-35413616
Coord A exon
chr2:35424482-35424745
Coord C2 exon
chr2:35427253-35427368
Length
264 bp
Sequences
Splice sites
3' ss Seq
TCATCTTTTTCTATGGACAGTTT
3' ss Score
7.23
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GTCGCCTAGACTTCGTCCCTCAGTGCGGCCATGGCACATTCAGTATGGAGGTTTGCGGGTGTGTTTGTGAAGAAGGCTGGATTGGCAAGAACTGCACTGAGCCACGCTGCCCAGACGACTGCTCGGGCCAGGGCATTTGCATCGAAGGCGATTGTGTTTGCGACCGTAATTTCGGTGGTGAAAACTGCTCCGAGCCACGATGTCCAAGTGACTGCTCTGACAGGGGCTTGTGTATTGACGGGGAGTGTGTTTGTGAGGAGGCCTTCGCGGGGGAGGACTGCTCACTGGGCAGATGTCTAAACGACTGCTCGGATCAAGGGGCCTGTGTGAACGGAAGCTGCCAGTGCCGATCCGGCTTCCTGGGGGAAGACTGCTCGCTCATCTTCTGCGCTAATAACTGCAGCCAGAGAGGTGTGTGCAAGGAGGGCTTCTGCGTCTGTCAAGAGGGATACACAGGAGATGACTGCACTTCAG
Seq A exon
TTTTACCTCCAATGAATCTGCGAGTTCGGGGAGTGTCAGAAAACACCATTGATCTACAGTGGGAAGGCCCAGCGATCCTGACAGACTATCTCATCACTTATGCCCCCACAACTCCAGGCGGAGTCCAGCTAGAAATGAGAGTCCCGGGAAATGTTACCAACATCACCATCAAAGGTTTAAATCCGGGTCTGGAGTACAATGTCAACGTGTATGCAGTGATTGACAACATCATCAGCTCCCCAATGAACACCTTAGTCTCCACCT
Seq C2 exon
ATCTCTCAAATCCAGACGGTTTACTCTTCAAATCCATCATGGAGACATCCGTGGAGGTTCAATGGCAACCCTTAGACTACTTGTTTGATGGTTGGGAAATAAGCTTCATTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020771-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=8.2),PF079748=EGF_2=WD(100=17.0),PF079748=EGF_2=WD(100=17.0),PF079748=EGF_2=WD(100=17.0),PF079748=EGF_2=WD(100=17.0)
A:
PF0004116=fn3=WD(100=89.9)
C2:
PF0004116=fn3=PU(45.0=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACGGGGAGTGTGTTTGTG
R:
AACCTCCACGGATGTCTCCAT
Band lengths:
299-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]