RnoEX0092534 @ rn6
Exon Skipping
Gene
ENSRNOG00000002468 | Tnr
Description
tenascin R [Source:RGD Symbol;Acc:3886]
Coordinates
chr13:77604370-77613974:+
Coord C1 exon
chr13:77604370-77604846
Coord A exon
chr13:77610877-77611140
Coord C2 exon
chr13:77613763-77613974
Length
264 bp
Sequences
Splice sites
3' ss Seq
TGTGTATTGCCTCCTGGTAGTTA
3' ss Score
6.49
5' ss Seq
CTCGTACGT
5' ss Score
7.59
Exon sequences
Seq C1 exon
GACAACTGGACTATGTCCCTCACTGCAGCGGCCATGGCAACTTTAGCTTCGAGTCCTGTGGCTGCATCTGCAATGAAGGCTGGTTTGGCAAGAACTGCTCAGAGCCCTACTGCCCATTGGGCTGCTCCAGTCGGGGTGTATGTGTCGATGGCCAGTGCATTTGTGACAGTGAATACAGCGGAGATGACTGTTCAGAGCTCCGGTGCCCAACAGACTGCAGTTCCCGAGGGCTCTGTGTGGATGGGGAATGTGTCTGTGAAGAGCCCTACACAGGCGAGGACTGCAGGGAGCTGCGTTGCCCTGGGGACTGTTCAGGGAAGGGGCAATGTGCCAATGGTACCTGCCTGTGCCAAGAGGGCTATGCTGGTGAGGACTGCAGTCAGCGACGGTGTCTGAATGCTTGCAGTGGGCGAGGTCACTGCCAGGAGGGGCTCTGCATCTGTGAGGAGGGCTACCAGGGCCCTGACTGCTCAGCAG
Seq A exon
TTACCCCTCCAGAGGACTTGCGAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACGGGCCGATGGCAGTGACGGAATATGTGATCTCTTACCAGCCGACGGCCCTGGGGGGCCTTCAGCTCCAGCAGCGGGTGCCTGGAGATTGGAGTGGTGTCACCATCACGGAGCTGGAGCCAGGTCTCACCTACAACATCAGCGTCTACGCTGTCATTAGCAACATCCTCAGCCTTCCCATCACTGCCAAGGTGGCCACTC
Seq C2 exon
GACACCAAGGGAGGTCACAAGACACAGCACCAGGAAGCGATCTCTGCCCCTGCCAGGGATGGCCATGACATTGCCACCCACATTGCTGTGTTCCAGATCTTTCTACTCCTCAAGGGCTACAGTTCAAGACGATCACAGAGACCACCGTGGAAGTGCAGTGGGAGCCCTTCTCTTTCTCCTTCGATGGGTGGGAGATCAGCTTCACTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002468_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=18.1)
A:
PF0004116=fn3=WD(100=87.6)
C2:
PF0004116=fn3=PU(44.4=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGACTGCAGTTCCCGAG
R:
TCTTGTGACCTCCCTTGGTGT
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]