RnoEX0092527 @ rn6
Exon Skipping
Gene
ENSRNOG00000002468 | Tnr
Description
tenascin R [Source:RGD Symbol;Acc:3886]
Coordinates
chr13:77610877-77616378:+
Coord C1 exon
chr13:77610877-77611140
Coord A exon
chr13:77613859-77613974
Coord C2 exon
chr13:77616228-77616378
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCCACATTGCTGTGTTCCAGATC
3' ss Score
9.53
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TTACCCCTCCAGAGGACTTGCGAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACGGGCCGATGGCAGTGACGGAATATGTGATCTCTTACCAGCCGACGGCCCTGGGGGGCCTTCAGCTCCAGCAGCGGGTGCCTGGAGATTGGAGTGGTGTCACCATCACGGAGCTGGAGCCAGGTCTCACCTACAACATCAGCGTCTACGCTGTCATTAGCAACATCCTCAGCCTTCCCATCACTGCCAAGGTGGCCACTC
Seq A exon
ATCTTTCTACTCCTCAAGGGCTACAGTTCAAGACGATCACAGAGACCACCGTGGAAGTGCAGTGGGAGCCCTTCTCTTTCTCCTTCGATGGGTGGGAGATCAGCTTCACTCCAAAG
Seq C2 exon
AACAATGAAGGAGGGGTGATAGCTCAGCTCCCCAGCGATGTTACGTCCTTTAACCAAACGGGACTGAAACCTGGGGAGGAGTACATTGTGAATGTTGTAGCACTAAAGGAACAAGCCCGGAGCCCTCCGACCTCTGCCAGCGTCTCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002468-'11-12,'11-11,12-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.6)
A:
PF0004116=fn3=PU(44.4=92.3)
C2:
PF0004116=fn3=PD(53.1=84.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCATTGAGCTGGAATGGG
R:
GCTGAGCTATCACCCCTCCTT
Band lengths:
250-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]