GgaEX1059699 @ galGal4
Exon Skipping
Gene
ENSGALG00000004526 | TNR
Description
tenascin-R precursor [Source:RefSeq peptide;Acc:NP_990607]
Coordinates
chr8:7014279-7018078:+
Coord C1 exon
chr8:7014279-7014542
Coord A exon
chr8:7015435-7015550
Coord C2 exon
chr8:7017928-7018078
Length
116 bp
Sequences
Splice sites
3' ss Seq
CACCTCCTGGTCCCTTCTAGACT
3' ss Score
7.78
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TGGCTCCTCCTGAAAACCTGCGTGTGACAGGGATCAGCGATGGCTCCATTGAGCTAGCATGGGACAGCCCAGGAGCAGCCACTGAGTACGTGGTATCATACCAGCCAGCGGGGCCAGGGGGATCCCAGCTCCAGCAGCGGGTGCCTGGGGACTGGAGCACCATCACCATCACGGAGCTGGAGCCAGGTGTTGCCTACAATGTCAGCATCTACGCAGTCATCAGCGATGTCTTGAGCAGCCCTGTCACCACCAAGGTGACAACCA
Seq A exon
ACTTGGCCACGCCGCAGGGGCTGAAGTTCAAGACCATCACAGAGACGACCGTGGAGGTGCAGTGGGAGCCCTTCTCCTTCCCTTTTGATGGCTGGGAGATCAGCTTCATCCCCAAG
Seq C2 exon
AACAACGAGGGTGGTGTGATTGCCCAGCTCCCCAGCACCGTCACCACCTTCAACCAGACGGGGCTGAAGCCAGGCGAGGAGTACACTGTCACCGTGGTGGCTCTGAAGGACCAAGCCAGGAGCCCCCCAGCCTCTGACAGCATCTCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004526-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.000 C2=0.157
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
PF0004116=fn3=PU(44.4=92.3)
C2:
PF0004116=fn3=PD(53.1=84.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCACTGAGTACGTGGTA
R:
GTCTGGTTGAAGGTGGTGACG
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]