BtaEX6069889 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011706 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr16:58090538-58097141:-
Coord C1 exon
chr16:58096878-58097141
Coord A exon
chr16:58092984-58093099
Coord C2 exon
chr16:58090538-58090688
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCCACATTGCTGTGTTCCAGATC
3' ss Score
9.53
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TTGCCCCTCCAGAGGACTTGCGAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACGGGCCGATGGCAGTGACGGAATATGTGATCTCTTACCAGCCGACGGCCCTGGGGGGCCTCCAGCTCCAGCAGCGGGTGCCTGGAGATTGGAGTGGCGTCACCATCTCAGAGCTGGAGCCAGGTCTCACCTACAACATCAGCGTCTACGCTGTCATTAGCAACATCCTCAGCCTTCCCATCACTGCCAAGGTGGCCACCC
Seq A exon
ATCTCTCCACGCCTCAAGGGCTCCGATTCAAGACGATCACAGAGACCACCGTGGAGGTGCAGTGGGAGCCCTTCTCATTCTCCTTCGATGGGTGGGAGATCAGCTTCATTCCAAAG
Seq C2 exon
AACAATGAAGGAGGGGTGATTGCCCAGCTCCCCAGTGACGTCACATCCTTCAACCAGACAGGACTAAAGCCTGGGGAGGAATACATTGTCAATGTGGTGGCTTTGAAAGAGCAAGCCCGGAGCCCCCCTACCTCGGCCAGCGTCTCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011706-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.6)
A:
PF0004116=fn3=PU(44.4=92.3)
C2:
PF0004116=fn3=PD(53.1=84.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCTCTTACCAGCCGACG
R:
TCCCCAGGCTTTAGTCCTGTC
Band lengths:
252-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]