MmuEX6028602 @ mm9
Exon Skipping
Gene
ENSMUSG00000015829 | Tnr
Description
tenascin R [Source:MGI Symbol;Acc:MGI:99516]
Coordinates
chr1:161788308-161793919:+
Coord C1 exon
chr1:161788308-161788571
Coord A exon
chr1:161791341-161791456
Coord C2 exon
chr1:161793769-161793919
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCCACATTGCTGTGTTCCAGATC
3' ss Score
9.53
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TTGCCCCTCCAGAGGACTTGCGAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACGGGCCGATGGCAGTGACGGAATATGTGATCTCTTACCAGCCGACGGCCCTGGGGGGCCTTCAGCTCCAGCAGCGGGTGCCTGGAGATTGGAGTGGTGTCACCATCATGGAGCTGGAGCCAGGTCTCACCTACAACATCAGCGTCTACGCTGTCATTAGCAACATCCTCAGCCTTCCCATCACTGCCAAGGTGGCCACTC
Seq A exon
ATCTCTCCACTCCTCAAGGGCTACAGTTCAAGACGATCACAGAGACCACCGTGGAGGTGCAGTGGGAGCCCTTCTCTTTCTCCTTCGACGGGTGGGAGATCAGCTTCATTCCAAAG
Seq C2 exon
AACAATGAAGGAGGGGTGATTGCTCAGCTCCCCAGCGATGTGACGTCCTTTAACCAGACAGGACTGAAACCTGGGGAGGAGTACATTGTGAATGTTGTGGCTCTAAAGGAACAAGCCCGGAGCCCTCCTACCTCTGCCAGCGTCTCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015829-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.6)
A:
PF0004116=fn3=PU(44.4=92.3)
C2:
PF0004116=fn3=PD(53.1=84.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCATTGAGCTGGAATGGG
R:
TGAGCAATCACCCCTCCTTCA
Band lengths:
248-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: