DreEX0080374 @ danRer10
Exon Skipping
Gene
ENSDARG00000020771 | tnr
Description
tenascin R (restrictin, janusin) [Source:ZFIN;Acc:ZDB-GENE-030804-1]
Coordinates
chr2:35424482-35431263:+
Coord C1 exon
chr2:35424482-35424745
Coord A exon
chr2:35427253-35427368
Coord C2 exon
chr2:35431113-35431263
Length
116 bp
Sequences
Splice sites
3' ss Seq
CATCAATCTGTACCTTTCAGATC
3' ss Score
8.22
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TTTTACCTCCAATGAATCTGCGAGTTCGGGGAGTGTCAGAAAACACCATTGATCTACAGTGGGAAGGCCCAGCGATCCTGACAGACTATCTCATCACTTATGCCCCCACAACTCCAGGCGGAGTCCAGCTAGAAATGAGAGTCCCGGGAAATGTTACCAACATCACCATCAAAGGTTTAAATCCGGGTCTGGAGTACAATGTCAACGTGTATGCAGTGATTGACAACATCATCAGCTCCCCAATGAACACCTTAGTCTCCACCT
Seq A exon
ATCTCTCAAATCCAGACGGTTTACTCTTCAAATCCATCATGGAGACATCCGTGGAGGTTCAATGGCAACCCTTAGACTACTTGTTTGATGGTTGGGAAATAAGCTTCATTCCCAAG
Seq C2 exon
GACAATGATGGAGGGATGACAGCACAGCTACCCAGTACCATCACATCTTTCCACCAAACGGGACTGAAGCCTGGAGAAGAATACACTGTCAACCTGGTGGCCCTGAAAGACCAAGGCAGGAGCCTGCCTGTTACCGCAACTGTTACCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020771-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
PF0004116=fn3=PU(45.0=92.3)
C2:
PF0004116=fn3=PD(52.5=82.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTATGCCCCCACAACTCC
R:
TCTTCTCCAGGCTTCAGTCCC
Band lengths:
250-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]