RnoEX6044974 @ rn6
Exon Skipping
Gene
ENSRNOG00000002468 | Tnr
Description
tenascin R [Source:RGD Symbol;Acc:3886]
Coordinates
chr13:77613859-77620495:+
Coord C1 exon
chr13:77613859-77613974
Coord A exon
chr13:77616228-77616378
Coord C2 exon
chr13:77620226-77620495
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGCCCCATTCTCCAGAAC
3' ss Score
8.82
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATCTTTCTACTCCTCAAGGGCTACAGTTCAAGACGATCACAGAGACCACCGTGGAAGTGCAGTGGGAGCCCTTCTCTTTCTCCTTCGATGGGTGGGAGATCAGCTTCACTCCAAAG
Seq A exon
AACAATGAAGGAGGGGTGATAGCTCAGCTCCCCAGCGATGTTACGTCCTTTAACCAAACGGGACTGAAACCTGGGGAGGAGTACATTGTGAATGTTGTAGCACTAAAGGAACAAGCCCGGAGCCCTCCGACCTCTGCCAGCGTCTCCACTG
Seq C2 exon
TCATTGACGGGCCCACACAGATCCTGGTTCGAGATGTCTCTGATACTGTGGCCTTTGTGGAATGGACCCCACCTCGAGCCAAAGTTGATTTCATTCTATTAAAATATGGCTTGGTGGGTGGCGAAGGTGGGAAGACTACCTTCCGGCTGCAGCCTCCCCTTAGCCAGTACTCAGTGCAAGCCCTTAGACCTGGCTCCCGCTACGAGGTGTCCATCAGCGCAGTCCGGGGGACCAATGAAAGTGATGCCTCAAGCACCCAGTTTACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002468-'4-15,'4-12,13-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.078 C2=0.220
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(44.4=92.3)
A:
PF0004116=fn3=PD(53.1=84.3)
C2:
PF0004116=fn3=WD(100=90.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAGAGCACTTGCCTAGCA
R:
ACCAGCACTTCATGGTACTGC
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]