HsaEX6035030 @ hg19
Exon Skipping
Gene
ENSG00000116147 | TNR
Description
tenascin R (restrictin, janusin) [Source:HGNC Symbol;Acc:11953]
Coordinates
chr1:175355168-175363031:-
Coord C1 exon
chr1:175362916-175363031
Coord A exon
chr1:175360424-175360574
Coord C2 exon
chr1:175355168-175355437
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTCCCCACTGTCCAGAAC
3' ss Score
6.19
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCTCTCCACTCCTCAAGGGCTACAATTTAAGACGATCACAGAGACCACCGTGGAGGTGCAGTGGGAGCCCTTCTCATTTTCCTTCGATGGGTGGGAAATCAGCTTCATTCCAAAG
Seq A exon
AACAATGAAGGGGGAGTGATTGCTCAGGTCCCCAGCGATGTTACGTCCTTTAACCAGACAGGACTAAAGCCTGGGGAGGAATACATTGTCAATGTGGTGGCTCTGAAAGAACAGGCCCGCAGCCCCCCTACCTCGGCCAGCGTCTCCACAG
Seq C2 exon
TCATTGACGGCCCCACGCAGATCCTGGTTCGCGATGTCTCGGACACTGTGGCTTTTGTGGAGTGGATTCCCCCTCGAGCCAAAGTCGATTTCATTCTTTTGAAATATGGCCTGGTGGGCGGGGAAGGTGGGAGGACCACCTTCCGGCTGCAGCCTCCCCTGAGCCAATACTCAGTGCAGGCCCTGCGGCCTGGCTCCCGATACGAGGTGTCAGTCAGTGCCGTCCGAGGGACCAACGAGAGCGATTCTGCCACCACTCAGTTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116147-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.078 C2=0.220
Domain overlap (PFAM):
C1:
PF0201812=CBM_4_9=PD(32.3=75.0),PF0004116=fn3=WD(100=92.5)
A:
PF0004116=fn3=PD(53.1=84.3)
C2:
PF0004116=fn3=WD(100=89.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGGTGGGAAATCAGCTT
R:
GACTGACACCTCGTATCGGGA
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)