HsaEX6035030 @ hg38
Exon Skipping
Gene
ENSG00000116147 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr1:175386032-175393895:-
Coord C1 exon
chr1:175393780-175393895
Coord A exon
chr1:175391288-175391438
Coord C2 exon
chr1:175386032-175386301
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTCCCCACTGTCCAGAAC
3' ss Score
6.19
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCTCTCCACTCCTCAAGGGCTACAATTTAAGACGATCACAGAGACCACCGTGGAGGTGCAGTGGGAGCCCTTCTCATTTTCCTTCGATGGGTGGGAAATCAGCTTCATTCCAAAG
Seq A exon
AACAATGAAGGGGGAGTGATTGCTCAGGTCCCCAGCGATGTTACGTCCTTTAACCAGACAGGACTAAAGCCTGGGGAGGAATACATTGTCAATGTGGTGGCTCTGAAAGAACAGGCCCGCAGCCCCCCTACCTCGGCCAGCGTCTCCACAG
Seq C2 exon
TCATTGACGGCCCCACGCAGATCCTGGTTCGCGATGTCTCGGACACTGTGGCTTTTGTGGAGTGGATTCCCCCTCGAGCCAAAGTCGATTTCATTCTTTTGAAATATGGCCTGGTGGGCGGGGAAGGTGGGAGGACCACCTTCCGGCTGCAGCCTCCCCTGAGCCAATACTCAGTGCAGGCCCTGCGGCCTGGCTCCCGATACGAGGTGTCAGTCAGTGCCGTCCGAGGGACCAACGAGAGCGATTCTGCCACCACTCAGTTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116147-'18-19,'18-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.220
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(44.4=92.3)
A:
PF0004116=fn3=PD(53.1=84.3)
C2:
PF0004116=fn3=WD(100=89.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGGTGGGAAATCAGCTT
R:
GACTGACACCTCGTATCGGGA
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains