BtaEX6069890 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011706 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr16:58084694-58093099:-
Coord C1 exon
chr16:58092984-58093099
Coord A exon
chr16:58090538-58090688
Coord C2 exon
chr16:58084694-58084963
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTTCCTTCCACCAGAAC
3' ss Score
10.21
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATCTCTCCACGCCTCAAGGGCTCCGATTCAAGACGATCACAGAGACCACCGTGGAGGTGCAGTGGGAGCCCTTCTCATTCTCCTTCGATGGGTGGGAGATCAGCTTCATTCCAAAG
Seq A exon
AACAATGAAGGAGGGGTGATTGCCCAGCTCCCCAGTGACGTCACATCCTTCAACCAGACAGGACTAAAGCCTGGGGAGGAATACATTGTCAATGTGGTGGCTTTGAAAGAGCAAGCCCGGAGCCCCCCTACCTCGGCCAGCGTCTCCACTG
Seq C2 exon
TCATTGATGGGCCCACGCATATCCTAGTTCGAGATGTCTCCGACACCGTGGCCTTCGTGGAGTGGACCCCACCTCGAGCCAAAGTCGATTTCATTCTCTTGAAGTACGGCCTGGTGGGCGGGGAAGGTGGGAAGACCACCTTCCGGCTGCAGCCTCCGCTGAGCCAGTACTCGGTACAGGCCCTGCGGCCGGGCTCCCGATACGAGGTGTGGGTCAGCGCGGTCCGCGGAACCAACGAGAGCGAGGCCACCGCCACCCAGTTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011706-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.078 C2=0.121
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(44.4=92.3)
A:
PF0004116=fn3=PD(53.1=84.3)
C2:
PF0004116=fn3=WD(100=90.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCGATGGGTGGGAGATC
R:
CTGACCCACACCTCGTATCGG
Band lengths:
253-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]