MmuEX6028601 @ mm10
Exon Skipping
Gene
ENSMUSG00000015829 | Tnr
Description
tenascin R [Source:MGI Symbol;Acc:MGI:99516]
Coordinates
chr1:159861210-159868285:+
Coord C1 exon
chr1:159861210-159861325
Coord A exon
chr1:159863638-159863788
Coord C2 exon
chr1:159868016-159868285
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTTTCGCCCCACTCTCCAGAAC
3' ss Score
7.82
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATCTCTCCACTCCTCAAGGGCTACAGTTCAAGACGATCACAGAGACCACCGTGGAGGTGCAGTGGGAGCCCTTCTCTTTCTCCTTCGACGGGTGGGAGATCAGCTTCATTCCAAAG
Seq A exon
AACAATGAAGGAGGGGTGATTGCTCAGCTCCCCAGCGATGTGACGTCCTTTAACCAGACAGGACTGAAACCTGGGGAGGAGTACATTGTGAATGTTGTGGCTCTAAAGGAACAAGCCCGGAGCCCTCCTACCTCTGCCAGCGTCTCCACTG
Seq C2 exon
TCATTGACGGGCCCACACAGATCCTGGTTCGAGATGTCTCTGATACTGTGGCTTTTGTGGAATGGACCCCACCTCGAGCCAAAGTTGATTTCATTCTTTTAAAATATGGCTTGGTGGGTGGCGAAGGCGGGAAGACGACCTTCCGGCTGCAGCCTCCCTTAAGCCAGTACTCCGTGCAAGCCCTTAGACCTGGCTCGCGCTACGAGGTGTCCATCAGCGCAGTCCGGGGGACCAATGAGAGTGAAGCCTCAAGCACCCAATTTACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015829-'18-16,'18-14,21-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.220
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(44.4=92.3)
A:
PF0004116=fn3=PD(53.1=84.3)
C2:
PF0004116=fn3=WD(100=90.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGCCCTTCTCTTTCTCC
R:
TCTAAGGGCTTGCACGGAGTA
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types