DreEX6027897 @ danRer10
Exon Skipping
Gene
ENSDARG00000020771 | tnr
Description
tenascin R (restrictin, janusin) [Source:ZFIN;Acc:ZDB-GENE-030804-1]
Coordinates
chr2:35427253-35436615:+
Coord C1 exon
chr2:35427253-35427368
Coord A exon
chr2:35431113-35431263
Coord C2 exon
chr2:35436346-35436615
Length
151 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTGTGCATATCAAAGGAC
3' ss Score
3.72
5' ss Seq
CACGTATGC
5' ss Score
4.23
Exon sequences
Seq C1 exon
ATCTCTCAAATCCAGACGGTTTACTCTTCAAATCCATCATGGAGACATCCGTGGAGGTTCAATGGCAACCCTTAGACTACTTGTTTGATGGTTGGGAAATAAGCTTCATTCCCAAG
Seq A exon
GACAATGATGGAGGGATGACAGCACAGCTACCCAGTACCATCACATCTTTCCACCAAACGGGACTGAAGCCTGGAGAAGAATACACTGTCAACCTGGTGGCCCTGAAAGACCAAGGCAGGAGCCTGCCTGTTACCGCAACTGTTACCACAC
Seq C2 exon
TGATTGATGGGCCAATACAGCTTATTGTGCGAGACATCTCAGACACGGTTGCGTTTGTGGAGTGGAGCCCACCCAAGGCTAAAGTGGACCAGATTATACTGCGTTATGGGCTGGTAGGGGTAGAAGGGCCAAAAACCACCTTTCGCCTTCAGCCTACTCTGAGCCAGTACTCACTCCAAGTCCTGAGGCCGGGATCTACATATGAAGTATCAGTCAGTGGAGTCCGCAATGGCACTGAGAGTGGAGTTATTTCAACAGAATTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020771-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.044
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(45.0=92.3)
A:
PF0004116=fn3=PD(52.5=82.4)
C2:
PF0004116=fn3=WD(100=91.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTTCAATGGCAACCCTT
R:
GCCTCAGGACTTGGAGTGAGT
Band lengths:
253-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]