GgaEX6043888 @ galGal4
Exon Skipping
Gene
ENSGALG00000004526 | TNR
Description
tenascin-R precursor [Source:RefSeq peptide;Acc:NP_990607]
Coordinates
chr8:7015435-7020589:+
Coord C1 exon
chr8:7015435-7015550
Coord A exon
chr8:7017928-7018078
Coord C2 exon
chr8:7020320-7020589
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCCCATTCCTGGCAGAAC
3' ss Score
9.4
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ACTTGGCCACGCCGCAGGGGCTGAAGTTCAAGACCATCACAGAGACGACCGTGGAGGTGCAGTGGGAGCCCTTCTCCTTCCCTTTTGATGGCTGGGAGATCAGCTTCATCCCCAAG
Seq A exon
AACAACGAGGGTGGTGTGATTGCCCAGCTCCCCAGCACCGTCACCACCTTCAACCAGACGGGGCTGAAGCCAGGCGAGGAGTACACTGTCACCGTGGTGGCTCTGAAGGACCAAGCCAGGAGCCCCCCAGCCTCTGACAGCATCTCCACCC
Seq C2 exon
TCATCGACGGTCCAACGCAGATCCTGGTGCGGGATGTCTCCGACACGGTGGCCTTTGTGGAGTGGACGCCGCCGCGCGCCCGGGTGGACGCCATCCTGCTGAAGTACGGGCTGGCGGACGGGGAGGGCGGGAGGACCACCTTCCGCCTGCAGCCCCCCCTCAGCCAGTACTCCCTGCAGGCCCTGCGGCCCGGCGCCCGCTACCACCTCGCTGTCAGCGCCCTCCGGGGTGCCAACGAGAGCCAGCCGGCCCTCGCCCAGTTCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004526-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.157 C2=0.110
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(44.4=92.3)
A:
PF0004116=fn3=PD(53.1=84.3)
C2:
PF0004116=fn3=WD(100=90.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACAGAGACGACCGTGGAG
R:
CAGGGAGTACTGGCTGAGGG
Band lengths:
257-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]