GgaEX6043889 @ galGal4
Exon Skipping
Gene
ENSGALG00000004526 | TNR
Description
tenascin-R precursor [Source:RefSeq peptide;Acc:NP_990607]
Coordinates
chr8:7013384-7015550:+
Coord C1 exon
chr8:7013384-7013860
Coord A exon
chr8:7014279-7014542
Coord C2 exon
chr8:7015435-7015550
Length
264 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTCTCTTCCCATCAGTGG
3' ss Score
8.99
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GACGCCTGGATTACACCTTACCATGCAGCGGCCACGGGAACTTCAGCCTGGAGTCGTGCCGTTGCATCTGCAGTGAGGGCTGGGCGGGCAGCAACTGCTCAGAGCCGCGCTGCCCACGGGGCTGCTCCAGCCGTGGGGTCTGCCTGGAGGGTCAGTGCGTCTGCGACAATGACTACGGCGGTGAGGACTGCTCCCAGCTCCGCTGCCCCGCCGGCTGCGGCTCCCGCGGGCTCTGCGTGGATGGAGAATGCATCTGCGAGGAGGGCTTTGGTGGGGAGGACTGCTCTCAGCCCCGCTGCCCCCGTGATTGCTCGGGAAGGGGACACTGTGACAACGGCACCTGTGTGTGCGCCGAGGGCTATGCTGGGGAGGACTGCGGGTGGCTGCGGTGTCCCAACGCCTGCAGCGGACGAGGCGTCTGCCAGGATGGCCTCTGCATCTGCGAGGACGGCTACGGAGGGCAGGACTGCTCGGCAG
Seq A exon
TGGCTCCTCCTGAAAACCTGCGTGTGACAGGGATCAGCGATGGCTCCATTGAGCTAGCATGGGACAGCCCAGGAGCAGCCACTGAGTACGTGGTATCATACCAGCCAGCGGGGCCAGGGGGATCCCAGCTCCAGCAGCGGGTGCCTGGGGACTGGAGCACCATCACCATCACGGAGCTGGAGCCAGGTGTTGCCTACAATGTCAGCATCTACGCAGTCATCAGCGATGTCTTGAGCAGCCCTGTCACCACCAAGGTGACAACCA
Seq C2 exon
ACTTGGCCACGCCGCAGGGGCTGAAGTTCAAGACCATCACAGAGACGACCGTGGAGGTGCAGTGGGAGCCCTTCTCCTTCCCTTTTGATGGCTGGGAGATCAGCTTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004526-'4-4,'4-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.101 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9)
A:
PF0004116=fn3=WD(100=89.9)
C2:
PF0004116=fn3=PU(44.4=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGTGGATGGAGAATGCATC
R:
CGGTCGTCTCTGTGATGGTCT
Band lengths:
295-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]