BtaEX0037427 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013510 | TOR2A
Description
Bos taurus torsin family 2, member A (TOR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001083476]
Coordinates
chr11:98426949-98429110:-
Coord C1 exon
chr11:98428936-98429110
Coord A exon
chr11:98428070-98428335
Coord C2 exon
chr11:98426949-98427124
Length
266 bp
Sequences
Splice sites
3' ss Seq
CACTGTTCTTGTGGCCCTAGGTC
3' ss Score
9.88
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGACTGAGCTTCTGCCTCACCCGGATGGCGGCTGCGACGCGCAGCTGCCGGCCCTGGGGCTCGCTCCTCGGGCTGATCTGGCTGGTCTCGGCCGCGGCCGCGTCCTGGGATCTGAGTTCGCTGCGTTGCAACTTCGGCTCATTCTGCGAATGTGACTTCCAGCCCGACTTCCAGG
Seq A exon
GTCTGGAGTGTGACCTGGCCCAGCACCTGGCGGGCCAGCACTTGGCCAGGTCGCTGGTGGTGAAGGCACTGAAGGCTTTCCTGCAGGATCCAGCCCCCACCAAGCCGCTGGTCCTCTCTCTGCATGGCTGGACCGGCACTGGCAAGTCCTATGTCAGCTCCCTGCTGGCGCACTACCTCTTCCGGGATGGCCTCCGTAGCCCCCACGTGCATCACTTTTCCCCGGTCATCCACTTCCCCCACCCCAGCCACTTGGAGCGCTACAAG
Seq C2 exon
AAGGATCTTAAGAGCTGGGTGCAGGGGAACCTCACTGTCTGCAGCCGCTCCCTCTTTCTCTTCGATGAGATGGACAAGCTGGCCCCAGGCCTGATAGAAGTCCTGCGACCTTTCCTGGGCTCCTCCTGGGTTGTCTACGGGACCAACTATCGTAAAGCCATCTTCATCTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013510_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(12.7=31.4)
A:
PF063096=Torsin=FE(69.8=100)
C2:
PF063096=Torsin=PD(15.9=33.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGAGCTTCTGCCTCACC
R:
CAGGAAAGGTCGCAGGACTTC
Band lengths:
292-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development