DreEX0080650 @ danRer10
Exon Skipping
Gene
ENSDARG00000100559 | tor2a
Description
torsin family 2, member A [Source:ZFIN;Acc:ZDB-GENE-050913-60]
Coordinates
chr5:64427338-64432750:-
Coord C1 exon
chr5:64432586-64432750
Coord A exon
chr5:64429097-64429362
Coord C2 exon
chr5:64427338-64427513
Length
266 bp
Sequences
Splice sites
3' ss Seq
AACTGTGTCTGTTTTTACAGGTT
3' ss Score
10.26
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
Exon sequences
Seq C1 exon
CTTTCTCATTCAACTGATCTCGGAGCTGTGCTCCAGTGGGAGCCACAATGATATTTACACTACTTTTAATTTATTGTACGTCTTTAGGTAGCGGGTTTGAGATGAAATCTATATTTTGTTCAATATCTGACAGCTGCGACTGTGACTACAAACCAGACATAAAAG
Seq A exon
GTTTAGAGTGGGATCTTTATAAAAATCTTTATGGACAGCATATGGCTCAGGACATTGTCTCAGAAGCGGTGGTGAACTTTTTACAAAATGAAAACCCAGACAGACCACTAGTGCTGTCTTTCCATGGATCATCCGGGACTGGCAAAAGTCTAGTCAGCTCAATGATTGGACGACACATCTATGGAACGGCTATGGGGAGTCCATACATCCATCAGTTTATTCCCACATTACACTTTCCTTCAGCCGACAGGGTGCTACAGTACAGG
Seq C2 exon
TCAGATCTAAAGCGACGGGTTGAGAAAAGCCTCACCGCTTGCGCTCGTTCAATCTTCATCTTTGATGAGATGGAGAAAATGCCTCCAGGTGTGATCGACGTTTTAGAACCGCATTTAGGCCCCTATCACATTCTCTTCCAGACCAACTACCGCAAGGCCATTTATATATTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100559-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(12.7=40.0)
A:
PF063096=Torsin=FE(69.8=100)
C2:
PF063096=Torsin=PD(15.9=33.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGATCTCGGAGCTGTGCT
R:
TGCGGTAGTTGGTCTGGAAGA
Band lengths:
308-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]