MmuEX6100622 @ mm9
Exon Skipping
Gene
ENSMUSG00000009563 | Tor2a
Description
torsin family 2, member A [Source:MGI Symbol;Acc:MGI:1353596]
Coordinates
chr2:32612754-32615222:+
Coord C1 exon
chr2:32612754-32612970
Coord A exon
chr2:32614191-32614456
Coord C2 exon
chr2:32615047-32615222
Length
266 bp
Sequences
Splice sites
3' ss Seq
CGTTCCTTCTGTGGCCCTAGGTC
3' ss Score
10.73
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACCGGGAGCTGTAGTTCACAGGTTCTGGCGGTGGGCGGCCTCTGACCGAAATCGGGCCTCAACCGGATGGCGGTGGCGAGGCACGGCTACCGGCCCTGGGGCTCGATCCTCGGGCTGCTCGGGCTGGCCTTGGCTGCCGCCGCCGCCTGGGACGTGGCTTCTCTGCGCTGCACCTTCGGCTCGTTCTGCGAATGCGACTTCTGGCCCGACTTGCCGG
Seq A exon
GTCTGGAATGTGACCTGGCTCAACACCTGGCTGGCCAGCATTTGGCCAAGGCCCTGGTGGTGAAGTCACTGAAGGCCTTTGTACAGGACCCAGCCCCCAGCAAGCCGTTGGTCCTTTCCCTGCACGGCTGGACAGGCACCGGGAAGTCCTACGTTAGCTCCCTGCTGGCACAGCATCTCTTCCGGGATGGCCTTCGCAGCCCTCACGTCCATCACTTCTCCCCTATCATCCATTTCCCACATCCCAGCCGCACTGAGCAGTACAAG
Seq C2 exon
AAGGAGCTCAAGAGCTGGGTTCAGGGGAACCTCACTGCCTGTGGCCGATCCCTTTTCCTCTTCGATGAGATGGACAAGCTGCCTCCTGGCCTGATGGAAGTCCTGCAGCCCTTCCTGGGCCCTTCTTGGGTTGTGTATGGGACCAACTATCGCAAAGCCATCTTCATCTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009563-'0-4,'0-1,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.004 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(12.7=31.4)
A:
PF063096=Torsin=FE(69.8=100)
C2:
PF063096=Torsin=PD(15.9=33.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGTTCACAGGTTCTGGCGG
R:
AGGAGGCAGCTTGTCCATCTC
Band lengths:
294-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: