RnoEX0092839 @ rn6
Exon Skipping
Gene
ENSRNOG00000022514 | Tor2a
Description
torsin family 2, member A [Source:RGD Symbol;Acc:1359111]
Coordinates
chr3:11795629-11797861:+
Coord C1 exon
chr3:11795629-11795829
Coord A exon
chr3:11796799-11797064
Coord C2 exon
chr3:11797686-11797861
Length
266 bp
Sequences
Splice sites
3' ss Seq
CATTCCTTTTGTGGTCCTAGGTC
3' ss Score
9
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
CACAGGTTCTGGCAGTGGGCCGCCTCTGACTGAAATAGGGCCTCAACCGGATGGCGGTGGCTAGGCACGGCTGCCCGCCCTGGGGCTCGATCCTCGGGCTGCTCGTGCTGGCCTTGGCTGCCGCCGCCGCCTGGGACGTGTCTTTTCTGCGATGCAGTTTAGGGTCCTTCTGCGAATGTGACTTCTGGCCCGACTTGCCTG
Seq A exon
GTCTGGAATGTGACCTGGCTCGACACCTAGCTGGCCAGCATTTGGCCAAGGCCCTGGTGGTGAAGTCATTGAAGGCCTTTGTACAGGACCCAGCCCCCAGCAAGCCATTGGTCCTTTCCCTGCACGGCTGGACAGGCACTGGGAAGTCCTATGTGAGCTCCCTGCTGGCGCAGTATCTCTTCCGGGGTGGCCTTCGCAGCCCTCATGTCCATCACTTCTCTCCTATCATCCACTTCCCACATCCCAGCCACACTGAGCAGTACAAG
Seq C2 exon
AATGAGCTCAAGAGCTGGGTCCAGGGGAACCTCACTGCCTGTGGCCGGTCTCTTTTCCTCTTCGATGAGATGGACAAGCTGCCCCCTGGCCTGATGGAAGTCCTGAAGCCCTTCCTGGGCCCTTCTTGGGTTGTGTATGGGACCAACTATCGCAAAGCCATTTTCATCTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022514-'0-2,'0-1,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(12.7=31.4)
A:
PF063096=Torsin=FE(69.8=100)
C2:
PF063096=Torsin=PD(15.9=33.9)
Main Skipping Isoform:
ENSRNOT00000030694fB15485
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCCTCTGACTGAAATAGG
R:
GCTTCAGGACTTCCATCAGGC
Band lengths:
292-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]