BtaEX0037555 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012020 | TRAF5
Description
Bos taurus TNF receptor-associated factor 5 (TRAF5), mRNA. [Source:RefSeq mRNA;Acc:NM_001105340]
Coordinates
chr16:73906494-73911161:-
Coord C1 exon
chr16:73911104-73911161
Coord A exon
chr16:73909245-73909346
Coord C2 exon
chr16:73906494-73906658
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTATTATGTTTATCTTTTAGGTG
3' ss Score
11.96
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
AGAATTGGACACAGTCCCACTCTGCCCTGTAGATAAGGAGGTGATCAAATCTCAGGAG
Seq A exon
GTGTTTAAAGATAATTGCTGCAAAAGGGAAGTCCTCAATTTGTATGTGTTTTGCAAAAATGCTCCCAGATGTAATGCCAAGATTATTCTGGGACGATACCAG
Seq C2 exon
GACCACCTTCAGCACTGCCTGTTCCAGCCTGTGCAGTGTTCTAATGAAAACTGTCGGGAGCCAGTCCTTCGCAAAGATCTGAAAGAGCATCTGAGCGCATACTGCCAGTTTCGAGAGGAAAAATGCCTTTATTGCAAAAAGGATGTGGTAGTCATCAATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012020_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(25.6=50.0)
A:
NO
C2:
PF059116=DUF869=PU(1.6=7.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCACTCTGCCCTGTAGAT
R:
CTGTAGATTGATGACTACCACATCCT
Band lengths:
210-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development