RnoEX6045932 @ rn6
Exon Skipping
Gene
ENSRNOG00000047957 | Traf5
Description
TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]
Coordinates
chr13:110771680-110779976:-
Coord C1 exon
chr13:110779919-110779976
Coord A exon
chr13:110775481-110775582
Coord C2 exon
chr13:110771680-110771844
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGATCACATCTGTCTTTTAGGTG
3' ss Score
9.91
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
AGAATTGAACTCGGTGCCGATCTGCCCCGTAGACAAGGAGGTGATCAAGCCTCAGGAG
Seq A exon
GTGTTTAAAGACAACTGCTGCAAAAGAGAAGTTCTCAACTTACACGTCTACTGCAAAAACGCACCTGGATGCAATGCCAGGATTATTCTGGGACGGTTCCAG
Seq C2 exon
GACCACCTTCAGCACTGCTCCTTCCAAGCTGTGCCCTGCCCCAACCAGAGCTGCCGGGAAGCCATGCTCCGGAAAGATGTGAAAGAGCATCTGAGTGCCTACTGCCGGTTCCGAGAGGAGAAGTGCCTTTACTGCAAGAGGGACATAGTGGTGACTAACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047957-'1-5,'1-3,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(25.6=50.0)
A:
NO
C2:
PF0217613=zf-TRAF=PU(94.6=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTGAACTCGGTGCCGA
R:
GGTTAGTCACCACTATGTCCCT
Band lengths:
218-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]