DreEX6100004 @ danRer10
Exon Skipping
Gene
ENSDARG00000017240 | traf5
Description
Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]
Coordinates
chr22:38352669-38354868:+
Coord C1 exon
chr22:38352669-38352726
Coord A exon
chr22:38352808-38352909
Coord C2 exon
chr22:38354704-38354868
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGAGTTTGAATGCTTGCAGATC
3' ss Score
5.1
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGAAAATGGGGGAAGTTCGAAATGCCCGTTAGACAGCATTCCTATAAAACCCGAGGAG
Seq A exon
ATCTTCCAAGACAACTGCTGTAAAAGGGAACTGCTGAACTTGGAGGTTTTCTGCACCAACGCGCCAGAATGCACTCAGAGGTTTTCTTTATGTAACCTGCAG
Seq C2 exon
GATCATCTAAAGGCTTGTCCGCATGAGCGAGTCCGCTGTTCACACTCCGACTGCAGTGACATTGTGTTACGCAAAAACCTGCTGGAGCATCAGAGGAACGCCTGCTCCTACCGGCTGGAAACCTGCCATTACTGCAGGCAGAACTTCCCTGTGTCTCAGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017240-'4-3,'4-2,5-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(25.6=50.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGGAAGTTCGAAATGCC
R:
CATCATCTGAGACACAGGGAAGT
Band lengths:
218-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]