GgaEX6029335 @ galGal4
Exon Skipping
Gene
ENSGALG00000009864 | TRAF-5
Description
TNF receptor-associated factor 5 [Source:RefSeq peptide;Acc:NP_989550]
Coordinates
chr3:21612397-21614307:-
Coord C1 exon
chr3:21614250-21614307
Coord A exon
chr3:21613282-21613383
Coord C2 exon
chr3:21612397-21612561
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTCATCCCATTCCTTTACAGGTA
3' ss Score
11.75
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGGACTGAATGCAGTACCCACCTGTCCTGTCGACAAAGAAACAATAAAAATGCACGAG
Seq A exon
GTATTCAAAGACAACTGTTGTAAAAGAGAAGTTCTCAACTTGTACGTGTTCTGCAAAAACCTGCCTGACTGCAATTCAAAAATAATTCTGGGGCGGTATCAG
Seq C2 exon
GAACATCTTCAGCAGTGTTTGTTTGAAAGCGTGCAATGCACTAATGATGGATGTTGTGATCAAATCCTTCGGAAAGATTTGAAAGACCATTTGAGTCAGCACTGTAAATTTCGAGAGGAAATGTGTCAGTACTGTAATAAATATGTGGTGTTAATTAACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009864-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139231=zf-C3HC4_2=PD(27.5=55.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAATGCAGTACCCACCTGT
R:
TTATTACAGTACTGACACATTTCCTC
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]