BtaEX0037906 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004663 | TRUB2
Description
Bos taurus TruB pseudouridine (psi) synthase homolog 2 (E. coli) (TRUB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001110073]
Coordinates
chr11:98920587-98923531:-
Coord C1 exon
chr11:98923450-98923531
Coord A exon
chr11:98921580-98921652
Coord C2 exon
chr11:98920587-98920723
Length
73 bp
Sequences
Splice sites
3' ss Seq
CCACTGCCTGGCTTTTCCAGACC
3' ss Score
8.75
5' ss Seq
GACGTAAGA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GACTACACCGTGCGTGGCCTCCTGGGCAAAGCCACAGATGACTTCTGTGAGGACGGGCGGCTGGTGGAGAAGACGACGTACG
Seq A exon
ACCACGTGACCAGAGAGAAGTTGGACCGTATCCTGGCTGTGATCCAAGGTTCCCATCAGAAGGCTCTGGTGAC
Seq C2 exon
GTACTCCAACCTTGACCTACAGACCCAGGAGGCCTATGAGATGGCCGTTAGCGGCGTGATCCGGCCCATGAACAAGTCCCCGATGCTGATCACCGGCATCCGATGCCTCCAGTTTGCGCCTCCGGAATTTCTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004663-'10-13,'10-12,15-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(15.3=100),PF0150913=TruB_N=FE(26.7=100)
A:
PF0150913=TruB_N=FE(15.9=100)
C2:
PF0150913=TruB_N=FE(30.5=100)
Main Skipping Isoform:
ENSBTAT00000064542fB7407
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGCCACAGATGACTTCT
R:
GCAAACTGGAGGCATCGGATG
Band lengths:
174-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development