MmuEX6100090 @ mm9
Exon Skipping
Gene
ENSMUSG00000039826 | Trub2
Description
TruB pseudouridine (psi) synthase homolog 2 (E. coli) [Source:MGI Symbol;Acc:MGI:2442186]
Coordinates
chr2:29634252-29637721:-
Coord C1 exon
chr2:29637640-29637721
Coord A exon
chr2:29635343-29635415
Coord C2 exon
chr2:29634252-29634388
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTACCTCATGCCTTTTCCAGACC
3' ss Score
9.92
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATTACACAGTGCGTGGCCTCCTGGGCAAAGCTACAGACAACTTCTGTGAAGATGGACGGCTGATAGAGAAGACAACGTATG
Seq A exon
ACCACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGAT
Seq C2 exon
GTACTCCAACCTGGACCTGAAATCCCAGGAGGCCTATGAGATGGCTGTGCAAGGTGTGATCAGGCCCATGAACAAGTCCCCCATGCTCATCTCTGGCATCCGCTGCCTGCACTTTGCACCTCCCGAGTTTCTTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039826-'6-8,'6-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(17.8=100),PF0150913=TruB_N=FE(18.0=100)
A:
PF0084917=PseudoU_synth_2=PD(5.3=32.0),PF0150913=TruB_N=FE(16.0=100)
C2:
PF0150913=TruB_N=FE(30.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGAAGATGGACGGCTGA
R:
AAACTCGGGAGGTGCAAAGTG
Band lengths:
169-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: