DreEX0081627 @ danRer10
Exon Skipping
Gene
ENSDARG00000028379 | trub2
Description
TruB pseudouridine (psi) synthase family member 2 [Source:ZFIN;Acc:ZDB-GENE-040704-41]
Coordinates
chr6:41026044-41028868:-
Coord C1 exon
chr6:41028787-41028868
Coord A exon
chr6:41026851-41026923
Coord C2 exon
chr6:41026044-41026527
Length
73 bp
Sequences
Splice sites
3' ss Seq
GTCTACATTGCTTTTTTCAGACC
3' ss Score
7.77
5' ss Seq
CACGTGAGA
5' ss Score
5.23
Exon sequences
Seq C1 exon
GACTATACGATTGAGGGCGAGTTTGGAAAAGCCACCGATAATTTCAGTCACACTGGTCGGGTCATTGAGAAAACTACATATG
Seq A exon
ACCATATTACCCATGATAAGCTGGAAAGAGTTCTTGCCATGTTACAGGGATCCAATCAGAAAGCCTTGATCAC
Seq C2 exon
AGGTCCGGTGTGTAAATGAGACTCAGAAGTATCTGCGTAAATTGATTCATGAGGTTGGACTGGAGTTGCGGGCCTCTGCGGTCTGTACTAAAGTGCGAAGAACACGAGATGGACCCTTCAAGGTAGAGAACGCACTCACTCGACAACACTGGACTGCAGACAGTGTCTTACAAGCTATTAATCACTTTCGCAAGACTGCCCGCAAAATCAGGAAATCTGGGATGTACATGCAGAGCAATGTCCGGATGACCTTAGACGCAGATACCAGAGAGCAAACTCAGTCTGAACATATGAGTGGAGTGCGGGATGTACTTTCTGACATGATTCTGGAGAGAGAGACACCTGGAGAACCGAATGAGGGGAGAACAAAAAATTAAATCAACTGGGAATGATTTGAGTTCTGAGACATATTTACTTGTTCACTATAATTTATGTATTTGTTATGTTTTCATTATTGTGTGTCATTAAATGTGTATTTTAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028379_MULTIEX1-4/5=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(14.7=100),PF0150913=TruB_N=FE(18.0=100)
A:
PF0084917=PseudoU_synth_2=FE(13.0=100),PF0150913=TruB_N=FE(16.0=100)
C2:
PF0150913=TruB_N=PD(6.0=7.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTGGTCGGGTCATTGAG
R:
TGTTGTCGAGTGAGTGCGTTC
Band lengths:
182-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]