RnoEX6016212 @ rn6
Exon Skipping
Gene
ENSRNOG00000043189 | Trub2
Description
TruB pseudouridine synthase family member 2 [Source:RGD Symbol;Acc:1359394]
Coordinates
chr3:8339756-8343631:-
Coord C1 exon
chr3:8343550-8343631
Coord A exon
chr3:8340862-8340934
Coord C2 exon
chr3:8339756-8339892
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTGCCCCATGCCTCTTCCAGACC
3' ss Score
8.97
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GATTACACGGTTCGTGGCCTCCTGGGCAAAGCTACAGACAACTTCTGTGAAGATGGGCAGTTGATAGAGAAGACAACATATG
Seq A exon
ACCATGTGACTAGAGAGCGGCTGGACCGGATCCTGGCTATGATCCAAGGCTCCCACCAAAAAGCCCTGGTAAT
Seq C2 exon
GTACTCCAACCTGGACCTGAAGTCCCAGGAGGCCTACGAGAGGGCTGTGCAAGGCGTGATCCGGCCCATGAACAAGTCCCCAATGCTCATCGCTGGCATCCGCTGCCTGCACTTTGCACCTCCTGAGTTTCTTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043189-'6-15,'6-12,8-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.113
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(14.5=100),PF0150913=TruB_N=FE(18.0=100)
A:
PF0084917=PseudoU_synth_2=FE(12.9=100),PF0150913=TruB_N=FE(16.0=100)
C2:
PF0084917=PseudoU_synth_2=PD(9.7=38.3),PF0150913=TruB_N=FE(30.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGAAGATGGGCAGTTGA
R:
AACTCAGGAGGTGCAAAGTGC
Band lengths:
168-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]