BtaEX0038075 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98421475-98425143:+
Coord C1 exon
chr11:98421475-98421634
Coord A exon
chr11:98422680-98422764
Coord C2 exon
chr11:98423827-98425143
Length
85 bp
Sequences
Splice sites
3' ss Seq
CAGCCTGTCTCTGACCCTAGGAG
3' ss Score
8.38
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCAGCTCAAGGATCGGGAACAGAGGGCCCGGGCCGTGATCCTATCTTGGAAGCTGGAGCCGCCTTTACTGGAGACCCCCAAGGAGATGGAGACCCCTCTCCAGTTCCCGCAGGCAAAGCCAGAAGGCCCAGAGGAAGAGGTGCAGGTTCCTGGGAAGAAG
Seq A exon
GAGAAGCTGAAGCCGGCCCCCAGCAAGGAGTCATCCTTGACCGACAGCTACATCAGCCAGACCTCCTTAGGCTCCATCTTGGGCT
Seq C2 exon
TCAGAACCAGGTCCACCTCGGAGACGGAGACGTCCAGTACGGGTCAGGAATACAGGAGCACTTCCACCACTGTTGTGACAGTCTCTGACTCCTCACTGCTAAGGACACAGTCCTCAGACTCGGGGGACAGCAGGAAAGACCTAAGCCTGAACCACAGCCCCAGAGAAACCAAGTCCACCCCAGGCCACCACCAGAGACCCAGCAAGACGGAGGCCGCCCTCATCCACAGCCAGAGGCCCAGCAAGACGGAGGCCGCCCTCATCCACAGCCAGAGGCCCAGCAAGACGGATACAACCCAGATTCAAAGCCAGAGGCCCAGCAAGATGGACGCCACCCAGATTCGAAGCCAGAGGCCCAGCAAGACGGATACAACCCAGATTCAAAGCCAGAGGCCCAGCAAGATGGAGGCTTCCCTCATTCACAGCCAGAGGCCCAGTAAGACAGACACCACCCAGATTCAAAGCCAGAGGCCCAGCAAGACGGACGCCACCCAGATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509-'11-17,'11-15,12-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=0.724 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGGTTCCTGGGAAGAAG
R:
GCTGTGGTTCAGGCTTAGGTC
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development