MmuEX6100621 @ mm10
Exon Skipping
Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32762177-32767301:-
Coord C1 exon
chr2:32767178-32767301
Coord A exon
chr2:32764893-32764968
Coord C2 exon
chr2:32762177-32763005
Length
76 bp
Sequences
Splice sites
3' ss Seq
CAGTCTGATTCTTGCTATAGGTG
3' ss Score
7.35
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GCAGCGGTTATTGGAACGCAGGAAAGCCCAAGTCCTGGTGAAGCTCTGGAAGCAGGAACGTCTTGGGACCCCTGAAGAGGAAGTGACTCTTTACCAGGCTCCGCAGCTGGCAGAGGAAAAAAAG
Seq A exon
GTGAAAACCGCTCGCAGAAGGACATCCCTGACAGACAGCTATGCGGACCAGACCTCCTCAGGCTCCGTCTTTAGCA
Seq C2 exon
TTGTGAGCATCAGCACGTCGGGGCCAGAGATGTCAACCAGTCAGGAGTATAAGAGCTCTTCCCACACGGCTATAGAATCCTCTGAGTCCACACTGCTAAAGCCTCAGCTCTCAGTACCCAGGAAGAGCCAGGAACTGACCTGGAGCCCCAAGGTCGTCCAGGCAGTCACAGAGAACCTAATCCAGAACGCCACTGAGGTCACACCTGCCTATGGCCAAAGGGACTCCAAAAAGGCCACCCAAGTCCCAAAGCCCAAGAAGACAGAGGATCCCAAGGATCCTAGCCAGAGCACCAGCACGACAGAAGCCCCTGAGGGCCCAAGGCCTAGCAAGTCCAGGTCTACCCTGAGCGTAAAGGAGAGAATCAGAAGAGCTAAGGCTGTTCGCGCCCAGGGCTGGAAACTCAAGGCCCAGCGCAGCAGCCAGAAAGTAACAAAGACTCCCAGCCTGACCCACAGCACGACCCATAGTGACATTGGTGAGAGTGCCAATGATACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021-'21-26,'21-25,23-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=0.723 C2=0.928
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCCTGAAGAGGAAGTGA
R:
CCTGGGTACTGAGAGCTGAGG
Band lengths:
181-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types