Special

MmuEX6100621 @ mm9

Exon Skipping

Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32617697-32622821:-
Coord C1 exon
chr2:32622698-32622821
Coord A exon
chr2:32620413-32620488
Coord C2 exon
chr2:32617697-32618525
Length
76 bp
Sequences
Splice sites
3' ss Seq
CAGTCTGATTCTTGCTATAGGTG
3' ss Score
7.35
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GCAGCGGTTATTGGAACGCAGGAAAGCCCAAGTCCTGGTGAAGCTCTGGAAGCAGGAACGTCTTGGGACCCCTGAAGAGGAAGTGACTCTTTACCAGGCTCCGCAGCTGGCAGAGGAAAAAAAG
Seq A exon
GTGAAAACCGCTCGCAGAAGGACATCCCTGACAGACAGCTATGCGGACCAGACCTCCTCAGGCTCCGTCTTTAGCA
Seq C2 exon
TTGTGAGCATCAGCACGTCGGGGCCAGAGATGTCAACCAGTCAGGAGTATAAGAGCTCTTCCCACACGGCTATAGAATCCTCTGAGTCCACACTGCTAAAGCCTCAGCTCTCAGTACCCAGGAAGAGCCAGGAACTGACCTGGAGCCCCAAGGTCGTCCAGGCAGTCACAGAGAACCTAATCCAGAACGCCACTGAGGTCACACCTGCCTATGGCCAAAGGGACTCCAAAAAGGCCACCCAAGTCCCAAAGCCCAAGAAGACAGAGGATCCCAAGGATCCTAGCCAGAGCACCAGCACGACAGAAGCCCCTGAGGGCCCAAGGCCTAGCAAGTCCAGGTCTACCCTGAGCGTAAAGGAGAGAATCAGAAGAGCTAAGGCTGTTCGCGCCCAGGGCTGGAAACTCAAGGCCCAGCGCAGCAGCCAGAAAGTAACAAAGACTCCCAGCCTGACCCACAGCACGACCCATAGTGACATTGGTGAGAGTGCCAATGATACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021-'17-15,'17-14,19-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.271 A=0.723 C2=0.928
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000124031





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000068977, ENSMUSP00000088585, ENSMUSP00000123927, ENSMUSP00000124915
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr9:127729581-127729668 
ALTERNATIVE
HsaEX0067786
(TTC16)
Human
(hg19)
chr9:130491860-130491947 
ALTERNATIVE
HsaEX0067786
(TTC16)
Rat
(rn6)
chr3:11801359-11801437 
HIGH PSI
RnoEX0094608
(Ttc16)
Cow
(bosTau6)
chr11:98422680-98422764 
BtaEX0038075
(TTC16)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGACCCCTGAAGAGGAAGTGA

				
R: 
CCTGGGTACTGAGAGCTGAGG

				
Band lengths: 
181-257

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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