RnoEX0094608 @ rn6
Exon Skipping
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11799612-11803840:-
Coord C1 exon
chr3:11803714-11803840
Coord A exon
chr3:11801359-11801437
Coord C2 exon
chr3:11799612-11800463
Length
79 bp
Sequences
Splice sites
3' ss Seq
AAGCCTGATTCTCACTTTAGGTG
3' ss Score
7.25
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GCAACGGTTAATGGAACGCCAGAAAGCCCAAGCCATGGTGAGGTCCTGGAAGAAGGAGCCTCCTGAGATCCCCAAAGAAGAGGAAGTGACTATTTTCCAGGCTCCGGAGGTGGCAAAGGGAAAAAAG
Seq A exon
GTGAGGAAGATCCCTCGCAAGAGAACATCCCTGACAGACAGCTACGTGGACCAGACCTCCTCAGGTTCTGTCTTCAGCA
Seq C2 exon
TTATGAGCATCAGCACATCAGGGCCAGAGATGTCAACCAGCCGGGAATATATGAGCACTTCTCACACACCTATATCATCCTCCGAGTCCATACTGCCAAAGCCTCAGAAGCCTCAGTCCTCAGGACCCAGGACAAAACTGGAACTGACCTGGGGCCCCAAGGTCATCGAGGTGGTTTCAGAGTACCTAAACCAGAACGTCACTGAGATCACACCTGTTTATGGCAAAAAGGGCTCCACCAAAAACGCAGGGGCCACCCATGACCCAAAACCAAAGACAGAGGCTCCCAAGGGTCCCAGGAAGAGCACCAGCAGGCAAGAAGCCCTTGAGCGCCCAAAGCCTACCAAGTCCAGGTCTTCCCTGATCCTAAAGGAGAGAGTAAGAAGGGCTAAGGCTGTTCGAGCCCAGGGCTGGAAACCCAAGACCTGGAGCAGCAGTCAGGTACTAACAAAGAGTTCCAGCACAACCGTCCATGACAGTGGTAGGAGCCTCAGTAGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650-'15-16,'15-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=0.667 C2=0.926
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTGAGATCCCCAAAGA
R:
GGCAGTATGGACTCGGAGGAT
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]